The Rural Health Transformation Program (RHTP) presents a meaningful opportunity for organizations working to expand access and improve outcomes in rural communities. But with federal funding comes a heightened level of scrutiny. Accounting professionals play a critical role in ensuring grant management activities are set up properly, funds are managed appropriately, compliance requirements are met, and risks are minimized.
A strong foundation starts with understanding and applying the requirements in 2 CFR 200. Below are five essential areas every RHTP recipient should address to set up the grant management activities properly to support compliance and long-term success.
1. Build an accounting system that meets federal standards
Your accounting system should be designed to support clear, accurate grant tracking. At a minimum, it must allow you to:
- Track RHTP funds separately using unique fund identifiers
- Monitor budget-to-actual performance by approved cost categories
- Maintain transaction-level detail with supporting documentation
- Provide a complete audit trail from financial reports to source documents
- Align with federal or state reporting requirements for RHTP activities
- Adequately track grant activities for subrecipients
Cost classification is a key component of this structure. Direct costs are tied specifically to the grant, such as program staff salaries, supplies, travel, and contracted services. Indirect costs support shared operations like administration, facilities, and IT.
Organizations must either use a federally negotiated indirect cost rate agreement (NICRA) or elect the 15% de minimis rate if the organization does not have a negotiated rate.
Personnel expenses require particular attention. Time and effort reporting must reflect actual work performed, include total compensated activity, and be reviewed and approved. For employees working across multiple cost centers or activities, certifications should occur at least twice per year.
2. Establish internal controls that support compliance with Section 200.303
This starts with a strong control environment. Organizations should have documented financial policies aligned with federal requirements, clearly defined roles and responsibilities, and ongoing staff training. Leadership should actively reinforce the importance of compliance.
Day-to-day control activities are just as critical. These include:
- Segregating duties across authorization, custody, and recordkeeping (ARC)
- Defining clear mitigating controls in instances where the ARC activities cannot be separated
- Defining approval thresholds and workflows
- Performing regular reconciliations and management reviews
- Maintaining organized and complete documentation
- Retaining records for at least three years from the date of submission of the final financial report, in accordance with 2 CFR 200.334 (longer if required for audit, litigation, or other federal requirements)
If your program includes equipment purchases, you will also need property records and procedures for conducting physical inventories.
3. Follow procurement standards to ensure fair and open competition
Federal procurement rules are designed to promote competition and responsible spending. Your policies should align with the thresholds outlined in 2 CFR 200.
- Micro-purchases up to $10,000 do not require quotes but must be reasonably priced
- Small purchases up to $250,000 require quotes from multiple qualified sources
- Larger purchases may require sealed bids or competitive proposals, depending on the situation
- Sole-source procurement is allowed only in limited circumstances and must be fully justified and documented
Before entering into any covered transaction over $25,000, you must verify that the vendor is not suspended or debarred using SAM.gov. Many organizations extend this practice to all purchases as a risk mitigation step. These checks performed against SAM.gov are also required for any employees being paid under the grant in excess of $25,000. Organizations should have procedures in place to perform these checks on a monthly basis.
Conflict of interest policies should also be clearly defined. These should address financial interests, family relationships, gifts, and outside employment, along with disclosure requirements and enforcement measures.
4. Strengthen subrecipient oversight
If your organization passes funding through to subrecipients, you are responsible for ensuring those subrecipients comply with federal requirements.
Start by determining whether an entity is a subrecipient or a contractor. Subrecipients carry out program activities and make programmatic decisions. Contractors provide goods or services as part of normal business operations. This distinction affects how you monitor and manage the relationship, so it should be clearly documented.
- The prime recipient should develop clear grant agreements, terms and conditions, and other grant reporting templates that are in compliance with 2 CFR Part 200 and the specific requirements of the RHT program. These documents should be developed in order to provide the subrecipients with clear guidance and responsibilities under the grant.
- Before issuing an award, assess subrecipient risk based on factors like prior audit results, experience with federal funding, and internal systems. You will also need to confirm eligibility through SAM.gov and communicate all required award details.
- Ongoing monitoring should include reviewing financial and performance reports, conducting site visits when appropriate, and obtaining single audits for entities that meet the federal threshold. Any audit findings must be addressed with a formal management decision within six months.
5. Apply the rules for allowable costs
Every cost charged to RHTP funding must meet the five tests for allowability. Costs must be reasonable, allocable, consistent, conform to the award terms, and fully documented.
Some expenses require prior written approval before they can be charged to the grant. These may include pre-award costs beyond 90 days, equipment purchases over $5,000, certain participant support costs, foreign travel, and significant budget changes.
There are also costs that are always unallowable. These include alcohol, entertainment, fundraising expenses, personal-use items, lobbying, fines, and losses from other awards. Charging these costs can lead to audit findings or repayment requirements.
Set the foundation early
Managing RHTP funding successfully requires more than basic accounting. It demands a proactive approach to compliance across systems, processes, and people.
By strengthening your accounting infrastructure, reinforcing internal controls, aligning procurement practices, developing clear guidance for your subrecipients, actively monitoring subrecipients, and applying allowability rules, you can reduce risk and position your organization for clean audits and successful program outcomes.
A solid compliance framework does more than protect funding. It allows your organization to stay focused on its mission to improve rural health where it is needed most.
How BerryDunn can help
Our experienced consultants have decades of expertise advising rural healthcare providers. We partner with clients to deliver rural healthcare transformation services that are practical, compliant, and sustainable—grounded in firsthand experience with rural delivery models, workforce constraints, and community needs, and aligned with CMS requirements. Learn more about our services and team.